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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatgaatgttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTC

Basic information

species Zea mays
transcript GRMZM2G024151_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 3'ss of exon 10
--------------------gtaagtgcatgccattgtacattat---acatgatg---gaaatacccctgttgactttggttttctaagatcttcatgaatgttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTC
                      |||| ||    | |    |||||   || |  |    || |||    ||  ||| ||  |||  |||    ||  ||     |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||| || || ||||| ||||||||||
gtaagtatatatttaatggttgaagtacagataaattagtattatggcacttagttcctgagataattgtgcagacattcatttcataaatattttctgttacctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTC

upper sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 10
gtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatga-atgttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTC
                      ||    |     ||||      ||  ||||||     |   ||   |  ||  ||    |   ||| | || || ||||  |||||||||||||||||| | || |||||||| ||||| ||||||||||||||     | ||||| || | |||||||||||   
---------------------gtaagtttctcccaaat-----cgtccactttgaagggccctgacactggtggtatacacttcacagCTAGAAGCGCTTGCACACCCATTCTTTGATGAGTTGCGGGATCCTAACACTCGACTTCCAAATGGTCGTCCGCTACCACCTCTGTACAATTTCAAGCAAT

upper sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 10
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 10
gtaagtgcatgccattgtacattatacatgatggaaatacccctgttgactttggttttctaagatcttcatga-atgttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTC
                      ||    |     ||||      ||  ||||||     |   ||   |  ||  ||    |   ||| | || || ||||  |||||||||||||||||| | || |||||||| ||||| ||||||||||||||     | ||||| || | |||||||||||   
---------------------gtaagtttctcccaaat-----cgtccactttgaagagcactgacactggtggtatacacttcacagCTAGAAGCGCTTGCACACCCATTCTTTGATGAGTTGCGGGATCCTAACACTCGACTTCCAAATGGTCGTCCGCTACCACCTCTGTACAATTTCAAGCAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338696|gb|DN205669.1|DN205669
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|21331839|gb|BQ487220.1|BQ487220
EST:     CTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60337200|gb|DN204173.1|DN204173
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCATAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|7136141|gb|AW498445.1|AW498445
EST:     CTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|6020932|gb|AW065860.1|AW065860
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|83279374|gb|DV943382.1|DV943382
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5055752|gb|AI734639.1|AI734639
EST:     CTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60349350|gb|DN216323.1|DN216323
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60340745|gb|DN207718.1|DN207718
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60358044|gb|DN225017.1|DN225017
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4646575|gb|AI491371.2|AI491371
EST:     CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32847515|gb|CD987196.1|CD987196
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32846077|gb|CD985758.1|CD985758
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60344051|gb|DN211024.1|DN211024
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60357663|gb|DN224636.1|DN224636
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4226310|gb|AI396417.1|AI396417
EST:     CTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|18176194|gb|BM351234.1|BM351234
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117968|gb|DN558929.1|DN558929
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATACACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|211161694|gb|FL418712.1|FL418712
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117965|gb|DN558926.1|DN558926
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5816345|gb|AI987261.1|AI987261
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60395743|gb|DN228613.1|DN228613
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|30032096|gb|CB833947.1|CB833947
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5917409|gb|AW054200.1|AW054200
EST:     CGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCCCTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: CGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5871273|gb|AW017744.1|AW017744
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60338887|gb|DN205860.1|DN205860
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|4967195|gb|AI691889.1|AI691889
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|61117966|gb|DN558927.1|DN558927
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33092884|gb|CF052878.1|CF052878
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60394497|gb|DN227367.1|DN227367
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60396840|gb|DN229664.1|DN229664
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|5922176|gb|AW055446.1|AW055446
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATTTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60395783|gb|DN228653.1|DN228653
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60350467|gb|DN217440.1|DN217440
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|32928345|gb|CF033157.1|CF033157
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33097248|gb|CF057208.1|CF057208
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGA
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGA
EST: gi|60395644|gb|DN228514.1|DN228514
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|241994834|gb|GR421178.1|GR421178
EST:     ACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|211429305|gb|FL416846.1|FL416846
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|78544196|gb|DV621694.1|DV621694
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         GTGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33097421|gb|CF057381.1|CF057381
EST:     GTACTCCCCAAATCTGAGATGCGCTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: GTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|60346367|gb|DN213340.1|DN213340
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACT
EST: gi|33104403|gb|CF064363.1|CF064363
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC
EST: gi|32827595|gb|CD967273.1|CD967273
EST:     ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCT                         ATGGAGGCACTTGTTCACCCATTCTTTGATGAGCT-CGAGATC
genomic: ATCTGGTCTCTCGGCTACTCCAGTACTCCCCAAATCTGAGATGCACTGCTgtaagtgcat ... ttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaatacccctgttgactttggttttctaagatcttcatgaatgttttgtccagATGGAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTC
           tgttgac  putative branch site (score: 3)
                                             ttttgtcc  putative PPT
                       ttttctaa  TA-rich tract