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gtaagcaacgagcaccatgaagatctacttgtgttatttaaaacccatcactggataaggttaatctgaaactcttctggtccaattacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGGAGGCTGCCACAGCTCTCAGCTTT
species | Zea mays |
transcript | GRMZM2G023715_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGT CGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGEST: gi|76291830|gb|DV031398.1|DV031398
genomic: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGTgtaagcaacg ... tacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
EST: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGT CGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGEST: gi|71768120|gb|DR966057.1|DR966057
genomic: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGTgtaagcaacg ... tacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
EST: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGT CGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGEST: gi|148981983|gb|EE028043.2|EE028043
genomic: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGTgtaagcaacg ... tacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
EST: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGT CGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGEST: gi|148989785|gb|EE031798.2|EE031798
genomic: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGTgtaagcaacg ... tacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
EST: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGT CGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
genomic: CTCACCGGAACATTGCCAGATCTAACTAGGATGGATCTTCTCAATTACGTgtaagcaacg ... tacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTG
aacccatcactggataaggttaatctgaaactcttctggtccaattacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGGAGGCTGCCACAGCTCTCAGCTTT
ggttaat putative branch site (score: 4)
ttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaacgagcaccatgaagatctacttgtgttatttaaaacccatcactggataaggttaatctgaaactcttctggtccaattacacctcagCGACCTGAGCAACAACACATTTGATCCTTCACCATGCCCGGCGTGGTTTTGGAGGCTGCCACAGCTCTCAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT