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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcactaccacataactatcatttcagaagttttagagaaagcttaaattacccacctgttctttgtacagGTTACTTTGTGGTGTACAGATTCTCTGAAGCCTAAATCCTTCCTGGAAGAGCACTCGTTTCTTATCACTGATGTTAGATTTAGCCCAAGCATGTCGCGCC

Basic information

species Zea mays
transcript GRMZM2G022383_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355397|gb|DN222370.1|DN222370
EST:     ACTTCTCAGCTGATGGTAAGCTGCTTGCTACTGGTGGTCATGATAAAAAG                         GTTACTTTGTGGTGTACAGATTCTCTGAAGCCTAAATCCTTCCTGGAAGAG
genomic: ACTTCTCAGCTGATGGTAAGCTGCTTGCTACTGGTGGTCATGATAAAAAGgtatgatcac ... ctttgtacagGTTACTTTGTGGTGTACAGATTCTCTGAAGCCTAAATCCTTCCTGGAAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatttcagaagttttagagaaagcttaaattacccacctgttctttgtacagGTTACTTTGTGGTGTACAGATTCTCTGAAGCCTAAATCCTTCCTGGAAGAGCACTCGTTTCTTATCACTGATGTTAGATTTAGCCCAAGCATGTCGCGCC
                                   cccacctgttcttt  CT-rich tract
                           ttaaatta  TA-rich tract