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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatcaaaacacctgaccattttttaaacaccttacttttcaataacacatgctgtgtgttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC

Basic information

species Zea mays
transcript GRMZM2G020721_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020721_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 10
gtaattatcaaaacacctga----ccattttttaa-acacctt-acttttcaataacaca----tgctgtgtgttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC
||||||||||||  ||   |    ||| || ||    ||  |  |  |||   ||| ||     |||| |    ||||| |||||||||| ||||||||| || |||||||||||||| || |||||||| |||||||| |  ||||| |||||||||||||||||||||||
gtaattatcaaataactgaataagccacttattgttgcatatccatcttttggtaagaccaccttgctttactgtgatcacagGCTGGTTGTTTGTGGTACGAGTACATTTATAAGCTAGACAAGATTACCTACAACAAATACCATCCCTATACATCCTGGATCCCCATAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472577|gb|EB701535.1|EB701535
EST:     AGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: AGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5325022|gb|AI783213.1|AI783213
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5895688|gb|AW036934.1|AW036934
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5901242|gb|AW042342.1|AW042342
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5847179|gb|AW000258.1|AW000258
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|76933472|gb|DV173475.1|DV173475
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|6223805|gb|AW154936.1|AW154936
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5895689|gb|AW036935.1|AW036935
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|71762483|gb|DR960420.1|DR960420
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5343255|gb|AI795560.1|AI795560
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|5846835|gb|AI999918.1|AI999918
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
EST: gi|32936459|gb|CF041278.1|CF041278
EST:     TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATG                         GCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC
genomic: TGAGAACCAAACTCTATATTAAGACCTCAATAGTTACAGTGTCAATGATGgtaattatca ... ttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccattttttaaacaccttacttttcaataacacatgctgtgtgttgatcgcagGCTGGTTATTTGTGGTATGAATACATTTATAAGCTGGATAAGATTACTTACAACAAGTTGCATCCATATACATCCTGGATCCCCATAAC
                  ttacttttcaataa  TA-rich tract