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gtaagtttagtttgtgaaatggtttaaaagaaattaacagttagaattatgtaggttgtctattcagttctcctactctgatatttatgaaccgtacacaggagACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAATG
species | Zea mays |
transcript | GRMZM2G020002_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTC-TGAGGGAACGGATGCATATACTTTGGGACAGCATGGTGGAGEST: gi|113703820|gb|EE681324.1|EE681324
genomic: GTCTTGA-GGAACGGATGCATATACTTTGGGACAGCATGGT---Ggtaagtttag ... tacacagg
EST: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGGAGEST: gi|211361841|gb|FL432810.1|FL432810
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGT---Ggtaagtttag ... tacacagg
EST: GAACGGATGCATATACTTTGGGACAGCATGGTG ACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAATGEST: gi|78079711|gb|DV508123.1|DV508123
genomic: GAACGGATGCATATACTTTGGGACAGCATGGTGgtaagtttag ... tacacaggagACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAATG
EST: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGGAGEST: gi|148929734|gb|EC876616.2|EC876616
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGT---Ggtaagtttag ... tacacagg
EST: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGTGGAG
genomic: GTCTTGAGGAACGGATGCATATACTTTGGGACAGCATGGT---Ggtaagtttag ... tacacagg
tgtaggttgtctattcagttctcctactctgatatttatgaaccgtacacaggagACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAATG
ctctgat putative branch site (score: 78)
atatttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttagtttgtgaaatggtttaaaagaaattaacagttagaattatgtaggttgtctattcagttctcctactctgatatttatgaaccgtacacaggagACTGGCAAGATTTCTGTAACCGACTATGTCAGAGTGACAAGCACAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA