1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aggctctcgattgtaggactatatatatttttaattaggagatcagtttagagggcatttctgtattttttgcataatcaaagtggaacttaagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGGAGCTGGCGTCCGAGGACGACGAATCCCCACCAAGGAAGCAACCGACTG
species | Zea mays |
transcript | GRMZM2G019879_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTYTYTCAGATGAAGAAATGGAG GCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGEST: gi|44900995|gb|CK827540.1|CK827540
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAG
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAG AEST: gi|44900995|gb|CK827540.1|CK827540
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcag-
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAG AEST: gi|44900995|gb|CK827540.1|CK827540
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcag-
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAG AEST: gi|37396701|gb|CF635644.1|CF635644
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcag-
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAG GCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGEST: gi|211302278|gb|FL347320.1|FL347320
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAG
EST: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAG GCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGEST: gi|166410381|gb|EG279848.1|EG279848
genomic: ACGAGGAAGAAGTTGAGGAAGAAGCGCCTCTCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAG
EST: TCTCAGATGAAGAAATGGAG GCACCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAG
genomic: TCTCAGATGAAGAAATGGAGgtgaaatatc ... taagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAG
gtttagagggcatttctgtattttttgcataatcaaagtggaacttaagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGGAGCTGGCGTCCGAGGACGACGAATCCCCACCAAGGAAGCAACCGACTG
atttctgtatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctctcgattgtaggactatatatatttttaattaggagatcagtttagagggcatttctgtattttttgcataatcaaagtggaacttaagatgcagGCTCCCAAAAGGAAGAGAGAATCAGGGGGTGGTGGTGGGCACATGCGCGAGGAGCTGGCGTCCGAGGACGACGAATCCCCACCAAGGAAGCAACCGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa