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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtagtttgtgtatgaaattgaaatctagtaatatacacttttgaaccaaaagttgttagttctaagctctgttacaaattctttctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG

Basic information

species Zea mays
transcript GRMZM2G019361_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 11
gtgtagtttgtgtatgaaattgaaatctagtaatatacacttttgaaccaaaagttgttagttctaagctctgttacaaattc-tttctgta-tttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG
              |  | || |  |  |||    |||| |||| | |  ||     | | | | |    |||   ||| ||  |||||||  ||||||||| ||||||||  ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||
-------------gtacagtt-atttacagtg-cgtacattttttaccagaagacaatgaatccca----ctgcctcaacttgatttctgtgctttttagGTTAATCAAATTAGAGATTCTTTGGCAGTTATGGGCAACAACAGCACTGCTTTTAGCCTGCCCCAG

upper sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------------gtgtagtttgtgtatgaaattgaaatctagtaatatacacttttgaacca-----aaagttgttagttctaagctctgttacaaattctt-----tctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG
                                                              | | |   | ||  |||  | |||  ||| || || |||  ||  |     | | | ||    |||    | ||||  | |    |     ||    |  | ||||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || 
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtatttta-tcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA

upper sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------------------------gtgtagtttgtgtatgaaattgaaatctagtaatatacacttttgaaccaaaagttgttagttc--taagctctgttacaaattctttctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG
                                                                                       ||| ||| | |   ||| |  ||| |   | ||| || |     |  |  |||    | ||   || | | | | |||       ||    |  | ||||||||||||| |||||||| ||||| ||||||||  ||||||| ||||| |||||||| || || 
gtatggttttccatttgttttaaagcaaatgatctgatggaaggctttgtttactatttaattgcagggaacaaaaatattgatatggtattttatcttctaaaattcaatttccgattat-cagtaaaatagtactagtctggaattgaatatgttttataacactaaaagtcaacttcgtcagGTCAATCAAATCCGAGATTCATTGGCTGTTATGGGTGACAACAGTACTGCCTTTAGCTTACCGCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050205|gb|EB160623.1|EB160623
EST:     TAATGGTGACAAATATATTGATGAG                         GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCT
genomic: TAATGGTGACAAATATATTGATGAGgtgtagtttg ... gtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCT
EST: gi|31361636|gb|CD445993.1|CD445993
EST:     TAATGGTGACAAATATATTGATGAG                         GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCT
genomic: TAATGGTGACAAATATATTGATGAGgtgtagtttg ... gtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaccaaaagttgttagttctaagctctgttacaaattctttctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG
                                     ttctttctgtattttt  CT-rich tract
                                        tttctgtattttta  TA-rich tract