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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttaactagtttataccagatttctagcaaactataacattcttatcctacagttcatactgctatgcatctctaacactgataatgtttatttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG

Basic information

species Zea mays
transcript GRMZM2G014805_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014805_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 3'ss of exon 29
gttaactagtttataccagatttctagcaaactataacattcttatcctacagttcatactgctatgcatctctaacactgataatgtttatttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG
| |        | || | | | |||  ||    || |  || |     ||   ||    |    ||| |||||| |  | | ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||    || |||||||| ||||||||||||
gatgttagtactttaactgctgtcttccatctgatcatcttttctctataattttacggccaacatggatctctcatgccggtaatgcttatttgaacagTGGAAGCTTGCATTCATATCTATGAATCGGCCTGAATACCTCCAGGATGTCGACGTTGTATCTGCACGTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490260|gb|BU050183.1|BU050183
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|211029627|gb|FL157472.1|FL157472
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|18654871|gb|BM499676.1|BM499676
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|18654872|gb|BM499677.1|BM499677
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|211029629|gb|FL157474.1|FL157474
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|87152609|gb|DY397398.1|DY397398
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|60400188|gb|DN232995.1|DN232995
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|60400323|gb|DN233130.1|DN233130
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|211029628|gb|FL157473.1|FL157473
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGRATGAGGACTTCTCMAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|76019060|gb|DT946230.1|DT946230
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|76019059|gb|DT946229.1|DT946229
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|211029631|gb|FL157476.1|FL157476
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|18963174|gb|BM660282.1|BM660282
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|211029630|gb|FL157475.1|FL157475
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|18661897|gb|BM501640.1|BM501640
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: gi|94476779|gb|EB705737.1|EB705737
EST:     TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG                         TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctacagttcatactgctatgcatctctaacactgataatgtttatttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG
                                          tttattt  CT-rich tract
                                    ataatgtttatttgat  TA-rich tract