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gtgagctttaattattcccagtgaacactcttttttttaaaatcatttttggtgataagtggccttgagctgaaatttgatctgatgagccttttttggtacggtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGATGGTCCAGCAGATGGATCTGTAGAAAAGCTTTGTCCAAAAGCCAGCTT
species | Zea mays |
transcript | GRMZM2G011893_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGGATAGCTTGGGATGAAAGAAGGCCCAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|60352045|gb|DN219018.1|DN219018
genomic: GGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|211368558|gb|FL386260.1|FL386260
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|78179760|gb|DV550133.1|DV550133
genomic: TCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|60393994|gb|DN226864.1|DN226864
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|211290372|gb|FL395524.1|FL395524
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCRGTAGEST: gi|60348982|gb|DN215955.1|DN215955
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|8577165|gb|BE129802.1|BE129802
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|78122303|gb|DV540687.1|DV540687
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|60352117|gb|DN219090.1|DN219090
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|71428221|gb|DR809271.1|DR809271
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|60350066|gb|DN217039.1|DN217039
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|12047218|gb|BF729357.1|BF729357
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|60357511|gb|DN224484.1|DN224484
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGEST: gi|211246375|gb|FL451973.1|FL451973
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
EST: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG TGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
genomic: TGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTGgtgagcttta ... gtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAG
gtggccttgagctgaaatttgatctgatgagccttttttggtacggtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGATGGTCCAGCAGATGGATCTGTAGAAAAGCTTTGTCCAAAAGCCAGCTT
atctgat putative branch site (score: 4)
aaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctttaattattcccagtgaacactcttttttttaaaatcatttttggtgataagtggccttgagctgaaatttgatctgatgagccttttttggtacggtacttgcagTGACAGGGAAACTGTGGCCAAAGCTATATGAGATCAAGCTACGGGCAGTAGATGGTCCAGCAGATGGATCTGTAGAAAAGCTTTGTCCAAAAGCCAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA