1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtacctctagtttggatgctggaagccgtggtggtttaatcaattttctctaaggacattagtttttaacatgcatgcaaggttacaacgtatctgttacgtttacctattggactggctgatttgcttaattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTGTTGAACTAACTTCAAAGGTTGAAGAGCAGCAAAAGCTGATTTTGAAAC
species | Zea mays |
transcript | GRMZM2G011219_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|31359186|gb|CD443543.1|CD443543
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|67019074|gb|CO447823.1|CO447823
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|211487822|gb|FL394864.1|FL394864
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|211348173|gb|FL379645.1|FL379645
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|211068379|gb|FL392617.1|FL392617
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|60672578|gb|DN475280.1|DN475280
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|60399347|gb|DN232161.1|DN232161
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTEST: gi|211209479|gb|FL385673.1|FL385673
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
EST: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAG GTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
genomic: TGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGgtacctctag ... aattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATT
acaacgtatctgttacgtttacctattggactggctgatttgcttaattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTGTTGAACTAACTTCAAAGGTTGAAGAGCAGCAAAAGCTGATTTTGAAAC
gcttaat putative branch site (score: 156)
atttgcttaattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctctagtttggatgctggaagccgtggtggtttaatcaattttctctaaggacattagtttttaacatgcatgcaaggttacaacgtatctgttacgtttacctattggactggctgatttgcttaattttaaagGTTAAAATATCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTGTTGAACTAACTTCAAAGGTTGAAGAGCAGCAAAAGCTGATTTTGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT