Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatcctgttgcattaaaagatataatattcttttctataggtttggttatacaaattgttcaagaattaatgttctgatgcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTTAGTGACATTGGTGTGCACCTTCAGCAGAAG

Basic information

species Zea mays
transcript GRMZM2G009591_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009591_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os10g26570.1 (Oryza sativa), 3'ss of exon 11
----gttag-atcctgttgcattaaaagatataatat-tcttttctataggtttggttataca-aattgttcaagaattaatgttctgatgcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTTAGTGACATTGGTGTGCACCTTCAGCAGAAG
     |||| || |        | |  | | |||  | ||   |||||        ||||| | |||  ||    ||  |||| |   ||| ||| ||||||| |  | ||| ||||||| |||||||||||||||||||||||| | ||| |||| || || ||||||||||| ||||||
gagtattagtataccacatagatcattgctgtaagctatccagtctatcatccactttatatataataattatgtaagaaatgctgcaatgtattatcagGAACATCTGCAACAGTCAAACGCAACTGATGCATCAGGGAACATGATCCTTGGTGATATCGGCGTGCACCTTCATCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|92088053|gb|EB484284.1|EB484284
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|78119430|gb|DV537814.1|DV537814
EST:     CAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
genomic: CAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|67014533|gb|CO443282.1|CO443282
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGTGTTGCTGAAGGAGCANGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCANGGAACATGGTTCTT
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|160481643|gb|EY254213.1|EY254213
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|160481647|gb|EY254217.1|EY254217
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAAAATGGTTCT
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCT
EST: gi|5713662|gb|AI943654.1|AI943654
EST:     CAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGCCAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTNTT
genomic: CAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|91056415|gb|EB166833.1|EB166833
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTT
EST: gi|211370273|gb|FK995942.1|FK995942
EST:     TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAG                         GAATACTTTCAAAAGCCAAATGC
genomic: TAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAGGACAGgttagatcct ... gcattttcagGAATACTTTCAAAAGTCAAATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataggtttggttatacaaattgttcaagaattaatgttctgatgcattttcagGAATACTTTCAAAAGTCAAATGCAACTGATGCATCAGGGAACATGGTTCTTAGTGACATTGGTGTGCACCTTCAGCAGAAG
                                      ttctgat  putative branch site (score: 3)
                                              cattttc  CT-rich tract
            ttatacaaattgtt  TA-rich tract