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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggccaaatgtttgttgtgtatttaattttcattgtctaattattattctaaaagttcaattttgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG

Basic information

species Zea mays
transcript GRMZM2G006507_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006507_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 10
----------gtagggccaaatgtttgttgtgtatttaattttcattgtctaattattattctaaaagttcaattttgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
             || ||| |  ||| |||||||||||| |||| ||| | || |||   | | | | |||||||| ||||||||||||||||||||| |||||||| |||||||||||  |||||||||||||||| |||||||||||||||
gtaaggggctaagggcccagaattttattgtgtatttaaatttctttgcccaaatatctgtattaca-ttcaattt-gatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTCTGGCATATGATTCAG

upper sequence: GRMZM2G006507_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT1G08040.2 (Arabidopsis thaliana), 3'ss of exon 10
----------------gtagggccaaatgtttgttgtgtatttaattttc-----attgtcta-attattattc--taaaagttcaattttg--atgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
                       |  ||  |   | | |   |||  | |     | ||  || || | | |||  ||| || |   ||||   |  ||||| |||||||| ||||||||| | || || |||||| | |||||||| |||||||||||||||||||||
gtacggctctgtactctctttctctcattctctctctttgactaacctactgaagagtgcttatatcaattttcgataacaggtgtgttttcccacttgcagGTTTGTTGAGATTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87153082|gb|DY397871.1|DY397871
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|78106684|gb|DV525102.1|DV525102
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|74235735|gb|DT643649.1|DT643649
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|18964823|gb|BM661216.1|BM661216
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|31348516|gb|CD432873.1|CD432873
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|24763232|gb|CA398411.1|CA398411
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|22490474|gb|BU050397.1|BU050397
EST:     GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
EST: gi|78544004|gb|DV621502.1|DV621502
EST:     GGGGAGAGACCAGGCGGGTGCACTGATCCACATCTACCACCATGTGCAGC                         ATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT
genomic: GAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGCgtagggccaa ... tgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttaattttcattgtctaattattattctaaaagttcaattttgatgtgcagATTTGTTGAAATTATGGCAACGGTGTTCTCTAGAAATGCATGGCGCTGTGTATGGCATATGATTCAG
     taattttcattgtcta  TA-rich tract