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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catggtgttggactgttggttgatattgcagttttcatatcactacattgtgctagaacaccttttagttacttgaacatctgttttgtccatggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG

Basic information

species Zea mays
transcript GRMZM2G006428_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211198902|gb|FL376281.1|FL376281
EST:     TTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG
genomic: TTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG
EST: gi|76281609|gb|DV021177.1|DV021177
EST:     CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAA-GGCACTGGGG
genomic: CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGGGG
EST: gi|211292139|gb|FL375498.1|FL375498
EST:     CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAAAGGCACTGGNGGGACCTTCAAAGCCTACAGAACGACAAG
genomic: CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGG-GGGACCTTCAAAGCCTACAGAACGACAAG
EST: gi|22521335|gb|BU080146.1|BU080146
EST:     CCCTTGAGAGATACACACATTATTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG
genomic: CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG
EST: gi|78080365|gb|DV508777.1|DV508777
EST:     CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCG                         TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG
genomic: CGCTTGAGAGATATACACATTATTATGAACGATGGGCAGCCAATCAGTCGgtaagtattg ... catggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtgctagaacaccttttagttacttgaacatctgttttgtccatggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG
                                      ttttgtcc  CT-rich tract
                 ttttagtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catggtgttggactgttggttgatattgcagttttcatatcactacattgtgctagaacaccttttagttacttgaacatctgttttgtccatggcgcagTCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG

- -ggtgttg
- - - - - - -tgttggt
- - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - cactaca
- - - - - - - - - - - - - - - - - - - - - - - - tgtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg