1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtctaagcttggtttgtgtggagtccgtcctcagattttaattttccacctttcaattttactgataaattgttatttctttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAAGGAATCTGGCGAAGAGCGTGACCACGCAGTAGGGAGAGGTAGATGAGA
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|89248870|gb|DY620656.1|DY620656
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTGGACGTGGACCAACCAEST: gi|148955139|gb|EC900656.2|EC900656
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTGGACGTGGACCAACCAEST: gi|71771453|gb|DR969390.1|DR969390
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|149005283|gb|EE039832.2|EE039832
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|74242021|gb|DT649935.1|DT649935
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|211029256|gb|FL478423.1|FL478423
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|86855990|gb|DY307001.1|DY307001
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCCCGCGTACCATCTGACTGTTCTCCAGGGATTCGACGTGGACCAACCAEST: gi|149014771|gb|EE044463.2|EE044463
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAEST: gi|113842557|gb|DW969340.1|DW969340
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTACTCCGGGGATTCGEST: gi|111197488|gb|EE295623.1|EE295623
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTT-CTCCGGGGATTCG
EST: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAG TTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
genomic: CACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa ... tttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCA
attttaattttccacctttcaattttactgataaattgttatttctttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAAGGAATCTGGCGAAGAGCGTGACCACGCAGTAGGGAGAGGTAGATGAGA
tactgat putative branch site (score: 2)
ttatttcttt putative PPT
tttcaattttactgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctaagcttggtttgtgtggagtccgtcctcagattttaattttccacctttcaattttactgataaattgttatttctttggttcagTTGCTCGCGTACCATCTGACTGTTCTCCGGGGATTCGACGTGGACCAACCAAGGAATCTGGCGAAGAGCGTGACCACGCAGTAGGGAGAGGTAGATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG