1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttctttcttgccagtttcctgtttctattctgggttgatcattatcagtcacagtcctttgtcctccatgttttacctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCTGATGAACTTGGAATCAAGG
species | Zea mays |
transcript | GRMZM2G005036_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCEST: gi|89758987|gb|DY687957.1|DY687957
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCEST: gi|71438038|gb|DR819088.1|DR819088
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCEST: gi|32863948|gb|CF003630.1|CF003630
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCEST: gi|211146232|gb|FL303723.1|FL303723
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCEST: gi|40336960|gb|CK371030.1|CK371030
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
EST: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG TTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
genomic: TGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAGgtttctttct ... cctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTC
tgggttgatcattatcagtcacagtcctttgtcctccatgttttacctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCTGATGAACTTGGAATCAAGG
ggttgat putative branch site (score: 5)
tcctttgtcctccatg putative PPT
atcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttcttgccagtttcctgtttctattctgggttgatcattatcagtcacagtcctttgtcctccatgttttacctcctgtagTTACACAAGAACAACTTGATCGTGCTAAAGAGGCAACCAAATCTGCAGTTCTGATGAACTTGGAATCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG