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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtgtgtcttaatatagctcatttgtatttgtgcaatctgactgacatcccgttcttcgtttcccatgacgacgacattgcgcgtgcgtgcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACGACCCGCCAGACGGCTCGGTGCTTCGTCTCCATCAGCGAGTACCACCGCC

Basic information

species Zea mays
transcript GRMZM2G000842_T04
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88753493|gb|DY537634.1|DY537634
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
EST: gi|88758004|gb|DY542145.1|DY542145
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
EST: gi|78108046|gb|DV526464.1|DV526464
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
EST: gi|74246417|gb|DT654331.1|DT654331
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
EST: gi|91869978|gb|EB400638.1|EB400638
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
EST: gi|71760398|gb|DR958335.1|DR958335
EST:     TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAG                         GCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG
genomic: TGGCCCTGGCACTTGACAGGCTCGACACCCTCGAGAGCTTTTACCGCCAGgtcagttttt ... gcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcccgttcttcgtttcccatgacgacgacattgcgcgtgcgtgcgaacgcagGCGGACAGCCTGAGGCAGCAGACCTTGCACCAGATGCGGCGGATCCTGACGACCCGCCAGACGGCTCGGTGCTTCGTCTCCATCAGCGAGTACCACCGCC
 gactgac  putative branch site (score: 2)