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gtattgttgttttctttatattctgttattatggtgcaaaattggatatctaacttggctaactccactcactctttttaattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAAATATCCATATGTTGAGAGCAATCTTGAGCTAATTGCTTACACTGTCTG
species | Zea mays |
transcript | GRMZM2G000749_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAEST: gi|211021453|gb|FL457596.1|FL457596
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAEST: gi|60341236|gb|DN208209.1|DN208209
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAEST: gi|88756696|gb|DY540837.1|DY540837
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAEST: gi|67040818|gb|CO467073.1|CO467073
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: TGCCAAATATGGCCTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGCGAAATCAAEST: gi|22543109|gb|BU093547.1|BU093547
genomic: TGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
EST: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG CAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGCGAAATCAA
genomic: AGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAGgtattgttgt ... aattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAA
tgcaaaattggatatctaacttggctaactccactcactctttttaattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAAATATCCATATGTTGAGAGCAATCTTGAGCTAATTGCTTACACTGTCTG
ctcttttta CT-rich tract
tctttttaattcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttgttttctttatattctgttattatggtgcaaaattggatatctaacttggctaactccactcactctttttaattcaaaagCAAAGCAGATGCCTACAGATGTTGGACATTTGAAAAGAATTGTGAAATCAAAATATCCATATGTTGAGAGCAATCTTGAGCTAATTGCTTACACTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA