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gttagtttgtcgacacagtacctagagctacgagtagtaaaagaatccttgatgtagagcatttctcctcttacagcctgtgctggccaaaactttgttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGTACACGTTCGATGGGGTGAACAAACCCCGTGACCTGTACGAGAAGCTGC
species | Zea mays |
transcript | GRMZM2G000052_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGEST: gi|6195066|gb|AW147170.1|AW147170
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|44900407|gb|CK826952.1|CK826952
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|86466375|gb|DY232746.1|DY232746
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCTCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|113701254|gb|EE678758.1|EE678758
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCGCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|71445884|gb|DR826934.1|DR826934
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|26557517|gb|CA829752.1|CA829752
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGG-GTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|6827827|gb|AW331470.1|AW331470
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|37377428|gb|CF625316.1|CF625316
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|6166688|gb|AW144952.1|AW144952
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|71764899|gb|DR962836.1|DR962836
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGEST: gi|154130374|gb|EC872162.2|EC872162
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
EST: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCG ATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
genomic: AGTTCGCCTTTTCTCAGCTGAAGAAGATCCTTCCCAATGCAGCTGAGCCGgttagtttgt ... gttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCG
atgtagagcatttctcctcttacagcctgtgctggccaaaactttgttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGTACACGTTCGATGGGGTGAACAAACCCCGTGACCTGTACGAGAAGCTGC
ctcttac putative branch site (score: 129)
ctttgtt putative PPT
aaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttgtcgacacagtacctagagctacgagtagtaaaagaatccttgatgtagagcatttctcctcttacagcctgtgctggccaaaactttgttactgcagATAAACTACCTGGTGTCGCGCTGGGGCTCGGACGAGAACACGCTTGGTTCGTACACGTTCGATGGGGTGAACAAACCCCGTGACCTGTACGAGAAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC