1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gctttgtcttgtttattagtctaattgtgtaaacgatacatttcctctgtacattatgtatatggaatcagaattaattttaaacacattattattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGAAGGGAA
species | Zea mays |
transcript | AC213600.3_FGT002 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTCATTCTAAGATATCCAGTCTAGCTGAGAA-CTAAAACATGATTTTG GTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGEST: gi|32834869|gb|CD974547.1|CD974547
genomic: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTGgtaagtataa ... attattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGG
EST: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTG GTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGEST: gi|211410948|gb|FL407147.1|FL407147
genomic: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTGgtaagtataa ... attattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGG
EST: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTG GTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGEST: gi|67033121|gb|CO461870.1|CO461870
genomic: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTGgtaagtataa ... attattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGG
EST: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTANA-CATGATTTTG GTAAATGACA-GGAGT-CTATTCCTTT-ATGATCAGTGTTTTGAGAC-AAGEST: gi|60340979|gb|DN207952.1|DN207952
genomic: AATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTGgtaagtataa ... attattatagGTAA-TGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAG
EST: AACATGATTTTG GTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGG
genomic: AACATGATTTTGgtaagtataa ... attattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGG
tctgtacattatgtatatggaatcagaattaattttaaacacattattattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGAAGGGAA
aattaat putative branch site (score: 59)
aatcagaattaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgtcttgtttattagtctaattgtgtaaacgatacatttcctctgtacattatgtatatggaatcagaattaattttaaacacattattattatagGTAATGACAAGGAGTTCTATTCCTTTTATGATCAGTGTTTTGAGACCAAGGAAGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -cttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca