1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttctccatttgttcccttggtcattgtatattcctgataatttaaagtttccagtctcgggtttaagtagggcagggaaactgtccatttgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCCTGGAGCAGATCTCAGGCTCTGATGAGCTTAGGAGGGAGTATGACGAGC
species | Zea mays |
transcript | GRMZM5G899800_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAG GGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCEST: gi|30306655|gb|CD001328.1|CD001328
genomic: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAGgtttctccat ... tgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
EST: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAG GGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCEST: gi|60344129|gb|DN211102.1|DN211102
genomic: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAGgtttctccat ... tgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
EST: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAG GGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCEST: gi|50336483|gb|CO531609.1|CO531609
genomic: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAGgtttctccat ... tgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
EST: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAG GGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCEST: gi|60336873|gb|DN203846.1|DN203846
genomic: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAGgtttctccat ... tgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
EST: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAG GGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
genomic: TCAGGTCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTCTTTCAGgtttctccat ... tgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTC
aagtttccagtctcgggtttaagtagggcagggaaactgtccatttgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCCTGGAGCAGATCTCAGGCTCTGATGAGCTTAGGAGGGAGTATGACGAGC
tccattt CT-rich tract
tttaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctccatttgttcccttggtcattgtatattcctgataatttaaagtttccagtctcgggtttaagtagggcagggaaactgtccatttgcactgcagGGTGATGTAGAATCCATTGCCTCCAAGAACCCCAAGGAGCTCACCGCTCTCCTGGAGCAGATCTCAGGCTCTGATGAGCTTAGGAGGGAGTATGACGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT