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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcatatttttatgttcctgtctggttcactgtggtgtatttcaagaacagatttgtcttgctttcaagacattgacatctgattttttggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAGATTCATGCCCTTCCTTTCAAAATGTTGTACTTCTACCGTTCAGACATC

Basic information

species Zea mays
transcript GRMZM5G896731_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438321|gb|DR819371.1|DR819371
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|89248113|gb|DY619899.1|DY619899
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|78109136|gb|DV527553.1|DV527553
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|88756830|gb|DY540971.1|DY540971
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|91050003|gb|EB160421.1|EB160421
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|76293027|gb|DV032595.1|DV032595
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|91053266|gb|EB163684.1|EB163684
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|211387371|gb|FL162620.1|FL162620
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
EST: gi|78085320|gb|DV513713.1|DV513713
EST:     GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGG                         ATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA
genomic: GCTGCATAGGAGGTCAGGAGAAGGCGCTCCAGCGCAGCACGGCAGCAGGGgtacggactg ... ggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacagatttgtcttgctttcaagacattgacatctgattttttggctcattagATTTCTGGACGGATCTGATTGAATAAACCGTGAAGGAGATGCCCTGGAATAGATTCATGCCCTTCCTTTCAAAATGTTGTACTTCTACCGTTCAGACATC
                                       ttttttg  CT-rich tract
                                    tgatttttt  TA-rich tract