Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

Basic information

species Zea mays
transcript GRMZM5G893252_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
           | || || |  ||   |||||| || ||||        ||| ||||  | |    ||        | ||      || |   |||  ||||||||||||||||||||| || |||||||||||||| ||||| || |||||||| || |||||||| || || || |||||||||||||||||||||||
----------gtaagctcccaatcttccccttcactttctcgg-----ggccagatctgatctgagatgaggttgacaca------cgacgcatgca-agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcct----agGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
 |  | ||  | || |      |   | ||  |   |   || |  || |  | | | ||     | ||  ||  |   |     ||   |||   ||    |||||||||||| ||||| ||||| || |||||||| || || || ||||||||||| || ||||| || |||||||||||||| || || ||||| || ||
-tccg-acgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttc--ttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
--------------------------------------------------------------------------------------gtaagcacccatcagatctccctccctccc--ttctctgtctctttcaccagccgg---atccaacca---tccattc--ctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
                                                                                        |  ||||   ||| |   ||  | | |   |||   |     | || ||||| |   ||||  |        | ||  | |   |||   | ||       ||   ||||||||||||||| || || || ||||||   ||||| ||| | ||||||||||| ||||||||||| ||||| |||||||||  ||| || ||||| ||
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagcacccatcagatctccctccctccctt----ctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcc-tagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
    ||  |||     || |  |        |    |  |||    |  | ||    | | ||    |  |  |      |    |  |   | || || |  |||||||||||| ||||| || |||||||| || || || || || || || ||||| |||||||| || ||||| || ||||||||||||||||| || ||
----gccaccactgtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttg-tacagttgtgaaaccgcgttccttgactacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagcacc--catcagatctccctccctcccttctctgtctctttcaccagccggatccaacc--atccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
  |||||    | |       |  ||      || |      |||| | ||||  | ||   |   | | ||   | |  || |  |  |    | | ||  |||||||||||| || || || || |||||||| || || || || || |||||||| || ||||| |||||||| || |||||||| ||||| || || ||
--aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatcagcttgctcgctctttaccgatatgttaacccgaggaggtt--tttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatcc-attcctcactcccatcacctcggctg--gtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
 ||| || | ||  | |   |  ||| |  |    || ||| |  |  |   ||   | |   ||| |    | | |   ||      || |   | ||  |||||||||||| || || || || |||||||| || || || || || |||||||| || ||||| |||||||| || |||||||| ||||| || || ||
ataa-cagcgat--gttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagcacccatca--gatctccctccctcccttctctgtctctttcaccag----ccggatccaaccatccattcctcactcccatcacctcggctggtgcct-agGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
       ||| | |  | | |    | ||      ||  | || |   | ||    |    || || |  |    | | |     ||       | |  ||| | |||||||||||| || || ||||| |||||||| || || || || || |||||||| || ||||| |||||||| || |||||||| ||||| || || ||
-------cccgtgaacggtgttgggcacttaagcttcaatttcctcagctagggtgcgacttcgaaactcctggacatgaactaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
                                  | |  |||||  ||     |||| || |          || | | ||    ||    | |    ||||||||| || ||||| || || |||||||||||||| ||||| || ||||||||||||||| | || |||||||| ||||| || |||||||| || ||
----------------------------gtaagccagattctttttcctctttgatctaatcg---------caatgcgatgga-tcaatcgat-tacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149042118|gb|EE047097.2|EE047097
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|148966811|gb|EE017912.2|EE017912
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|33770901|gb|CF273195.1|CF273195
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284410|gb|FL293344.1|FL293344
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCG-CGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCG-CTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284418|gb|FL293352.1|FL293352
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|149105528|gb|EE291060.2|EE291060
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284417|gb|FL293351.1|FL293351
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|148933206|gb|EC876854.2|EC876854
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284408|gb|FL293342.1|FL293342
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284415|gb|FL293349.1|FL293349
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|32869037|gb|CF008719.1|CF008719
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211282611|gb|FL293341.1|FL293341
EST:     GGCG-CCTTCTTCGGCTTCCTCGGCGCCG-CGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCMTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284416|gb|FL293350.1|FL293350
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284412|gb|FL293346.1|FL293346
EST:     GGCG-CCTTCTTCGGCTTCCTCGGCGCCG--SCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCG-CTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCMTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|71758217|gb|DR956154.1|DR956154
EST:     CGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: CGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|148970145|gb|EE021086.2|EE021086
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211284411|gb|FL293345.1|FL293345
EST:     GGCG-CCTTCTTCGGCTTCCTCGGMGCCG-CSCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCG-CTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|110544375|gb|EE047096.1|EE047096
EST:     CGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: CGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|67010333|gb|CO439082.1|CO439082
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|13490789|gb|BG517553.1|BG517553
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGNGACGGCCAAGAGCGGCGTCGGCGTCGCCTCC
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGG-GACGGCCAAGAGCGGCGTCGGCGTCGCCTCC
EST: gi|211284413|gb|FL293347.1|FL293347
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|32803336|gb|CD955572.1|CD955572
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|211494947|gb|FL444513.1|FL444513
EST:     TTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: TTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|32801030|gb|CD953266.1|CD953266
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTTGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
EST: gi|148951810|gb|EC897573.2|EC897573
EST:     GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCT                         GCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA
genomic: GGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 155

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 225

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 230

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 173

CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcaccc ... tggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagccggatccaaccatccattcctcactcccatcacctcggctggtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT
                       tcctcac  putative branch site (score: 173)