Sequence
atgc intronic sequence ATGC exonic sequence...cagtggtgccccccccacacacacacagagtctaacaattaacatgctttgcaatcaggcctggatgtttttgtgtatgaacatttccagttctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G892495_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g08018.1 (Oryza sativa), 3'ss of exon 8
cagtggtgcccccccca--cacacacacagagtctaacaattaacatgctttgcaatcaggcctggatgt-ttttgtgtatgaacatttccagtt--ctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
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--cttataccctcaagaattaagtttgtgacgttttttttctaacat---ttgtaatgtggtgtggaagtcttttgtatatgaaattttgcagtttcttttgtagGTAACTGCAGTCGGTCTAAACACTGAGTGGGGCTTATTGATGGCCAGCATCTCAGAAGACAACAATGAAGAAACTCCACTACAG
upper sequence: GRMZM5G892495_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 13
--cagtggtgccccccccacacacacacagagtctaacaattaacatgctt---tgcaatcaggcctggatgtttttgtgtatgaacatttccagttctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
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attgattatatttattct-tttttagttttagtccacctgttttattgattaaacagatttttttcctgatgtttctttgt-tggttgctctccttcct---cagGTAACAGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCCAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAG
upper sequence: GRMZM5G892495_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G00420.1 (Glycine max), 3'ss of exon 10
-cagtggtgccccccccacacacacacagagtctaacaattaacatgctt---tgcaatcaggcctggatgtttttgtgtatgaacatttccagttctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
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aaattgattatatttattcttttagttttagtccatctgttttattgattaaacagatttttttcctgatgtttttttat-tggttgctctccttcct---cagGTAACGGCTGTTGGTATCAATACTGAATGGGGTCTTCTAATGACCAGCATTTCCGAAGACAATGGCGAAGAAACTCCTTTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctttgcaatcaggcctggatgtttttgtgtatgaacatttccagttctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
ttctttgc CT-rich tract
atgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagtggtgccccccccacacacacacagagtctaacaattaacatgctttgcaatcaggcctggatgtttttgtgtatgaacatttccagttctttgcagGTAACGGCTGTTGGCCTTAACACCGAATGGGGTTTATTAATGGCCAGCATTTCAGAAGACAACAATGAAGAAACTCCTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG