1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatgtaacattcagttgtaagaatatgttttcttgtccttttttcaccatagtatgtgtgttccaatactgacctactaaacatttttttcctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGTCCGGAGCTTTGTGAACCCTGTTTGGACATCGTCAGGCAGACCAGTTGA
species | Zea mays |
transcript | GRMZM5G891056_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516008|gb|FL160574.1|FL160574
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516009|gb|FL160575.1|FL160575
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516003|gb|FL160569.1|FL160569
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516006|gb|FL160572.1|FL160572
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516004|gb|FL160570.1|FL160570
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516012|gb|FL160578.1|FL160578
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGEST: gi|211516002|gb|FL160568.1|FL160568
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
EST: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAG ACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
genomic: CTCCGTCGCCGTGGCATTCTGCTTCCTCTTCTCATCACTTGTCAGTAAAGgtggtggttg ... cctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATG
accatagtatgtgtgttccaatactgacctactaaacatttttttcctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGTCCGGAGCTTTGTGAACCCTGTTTGGACATCGTCAGGCAGACCAGTTGA
tactaaa putative branch site (score: 34)
catttttttcctgttt CT-rich tract
tactaaacattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtaacattcagttgtaagaatatgttttcttgtccttttttcaccatagtatgtgtgttccaatactgacctactaaacatttttttcctgttttagACGAAGATGCATCACCTGGTGTTGAGACCATGCTTGTGTTTTCTGATCATGTCCGGAGCTTTGTGAACCCTGTTTGGACATCGTCAGGCAGACCAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT