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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaatttcttgttccttttgctcttttattgcgctttgctctctctctctctccctctttagatttcagctaatacactgaaacatggttcaagctagagcagcagcctgttttaggtgttctttttcgtactaatcttggtcattttttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA

Basic information

species Zea mays
transcript GRMZM5G890512_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G890512_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 3'ss of exon 2
gttagtaatttcttgttccttttgctcttttattgcgctttgctctctctctctctccctctttagatttcagctaatacactgaaacatggttcaa-gctagagcagcagcctgttttaggt------------gttctttttcgtactaatcttggtcatttt-ttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA
                                                                     ||| || | |||  | | || | | ||| |||| |||| || | ||||||  ||                ||||| |  || ||      | |||| ||||||||||  |||||||||||||| | ||||||| | | |||||||||||||||||||| || || || |||||||||| || ||| ||||||||||||||||
--------------------------------------------------------------------gtca-ctgaaaca--ggagcacgatgcaaagctaaagcaacaacttgttttgtgttacacctggcacacattttttggagcttattgatacctttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATCAGAATAAGTACAAGTCAATGCTTATCCGTACATATTCTACAGTATGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagcagcctgttttaggtgttctttttcgtactaatcttggtcattttttcagGCTACCACAGATGGGAATAGAGCTAATGGACAACCATTGCTTGTCAATGATCAGAACAAATATAAATCAATGCTTACCCATACGTATTCTACAGTATGGA
                               tactaat  putative branch site (score: 1)
                                           tcattttttc  putative PPT
                                           tcatttttt  TA-rich tract