1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaaaagctaatcatatagtatgctatgacatcttcaaacattgtcattaaaacaaattcctagtttgaaccattcttttcctttccttttatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
species | Zea mays |
transcript | GRMZM5G884316_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCCAAGEST: gi|78111844|gb|DV530241.1|DV530241
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|76918443|gb|DV167297.1|DV167297
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|89762405|gb|DY690005.1|DY690005
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|76011704|gb|DT938874.1|DT938874
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|71431444|gb|DR812494.1|DR812494
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|76021372|gb|DT948542.1|DT948542
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|78105804|gb|DV524222.1|DV524222
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|74232780|gb|DT640694.1|DT640694
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|76911871|gb|DV164475.1|DV164475
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|78120002|gb|DV538386.1|DV538386
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|148971070|gb|EE021911.2|EE021911
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAGEST: gi|71439008|gb|DR820058.1|DR820058
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
cattaaaacaaattcctagtttgaaccattcttttcctttccttttatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
tttgaaccattctttt CT-rich tract
ttttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaagctaatcatatagtatgctatgacatcttcaaacattgtcattaaaacaaattcctagtttgaaccattcttttcctttccttttatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa