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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggctctcctttttttttttctctttgccgcaagcgctatgggatctgcgaatggtggtggcctcggtttgttaaagggtcgagcgtttgtttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAGCGCGTCGCCGTGAAGTACTACAGCGATGGCTGGCCTACTCTCTCCGCGA

Basic information

species Zea mays
transcript GRMZM5G883149_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G883149_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g38610.1 (Oryza sativa), 3'ss of exon 1
---cggctctcctttttttttttctctttgccgcaagcgcta--tgggatctgcgaatggtggtggcctcggtttgttaaagggtcgagcgtttgtttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAGCGCGTCGCCGTGAAGTACTACAGCGATGGCTGGCCTACTCTCTCCGCGA
    ||||| || ||| ||  || ||    | ||| | || |   ||||||| ||  || || | |        ||     |  | ||  ||||| | | | |||||  ||| ||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||  ||||  |||||||||||||| ||||
gctgggctccccgtttcttggttttc---acggcaggtgcaaatcgggatct-cgtttgttgttagttagttgatggcgttgctttgatggtttgctcg-tacagGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211335317|gb|FL100773.1|FL100773
EST:     CGACCACCGTCCTCCGCTCCCCGCCGTGAATCCTTCCTCCTCCCGCGATG                         GAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
genomic: CGACCACCGTCCTCCGCTCCCGGACGTGAATCCTTCCTCCTACCGCGATGgtaggtggtc ... tttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
EST: gi|50324981|gb|CO520107.1|CO520107
EST:     GGACGTGAATCCTTCCTCCTACCGCGATG                         GAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
genomic: GGACGTGAATCCTTCCTCCTACCGCGATGgtaggtggtc ... tttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
EST: gi|211477574|gb|FL100774.1|FL100774
EST:     CGACCACCGTCCTCCGCTCCCCGCCGTGAATCCTTCCTCCTCCCGCGATG                         GAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
genomic: CGACCACCGTCCTCCGCTCCCGGACGTGAATCCTTCCTCCTACCGCGATGgtaggtggtc ... tttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
EST: gi|40303119|gb|CK347506.1|CK347506
EST:     CCGCTCCCCGCCGTGAATCCTTCCTCCTCCCGCGATG                         GAGACCTTCCCGTTGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
genomic: CCGCTCCCGGACGTGAATCCTTCCTCCTACCGCGATGgtaggtggtc ... tttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
EST: gi|211477578|gb|FL100778.1|FL100778
EST:     CGACCACCGTCCTCCGCTCCCCGCCGTGAATCCTTCCTCCTCCCGCGATG                         GAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG
genomic: CGACCACCGTCCTCCGCTCCCGGACGTGAATCCTTCCTCCTACCGCGATGgtaggtggtc ... tttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcgaatggtggtggcctcggtttgttaaagggtcgagcgtttgtttgatgcagGAGACCTTCCCGTCGGTGAAGAACATCCTCCTACTGGACTCCGAGGGGAAGCGCGTCGCCGTGAAGTACTACAGCGATGGCTGGCCTACTCTCTCCGCGA
                                            gtttgat  putative branch site (score: 5)
                                         tttgttt  CT-rich tract
                      tttgttaaa  TA-rich tract