Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91054928|gb|EB165346.1|EB165346EST: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST:
gi|94472958|gb|EB701916.1|EB701916EST: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST:
gi|78090489|gb|DV518863.1|DV518863EST: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST:
gi|91054929|gb|EB165347.1|EB165347EST: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST:
gi|78084750|gb|DV513143.1|DV513143EST: AAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: AAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST:
gi|88748255|gb|DY532396.1|DY532396EST: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACGGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctaacaatatgttatttcccagactactgcccctcacttttaactttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCTCTCAATGGTGTTGGTCTTTGTCCTGCTAGTAGATCACTTAGCACCCATG
cccctcacttttaact CT-rich tract
ttttaactttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taactatgaatatatcaatttatgaatagtgtaaaagcactttttcctaacaatatgttatttcccagactactgcccctcacttttaactttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCTCTCAATGGTGTTGGTCTTTGTCCTGCTAGTAGATCACTTAGCACCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA