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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagattgctgtgagggaatctccaaatgataatccattgtccatttgtgtgacctttcatgaaatgtcagtgacctcaacttttttttttcaattgcagGATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTATGGATAGCCATATTGGGCCTGATAATGCTAGTTGGTGTGTACATATTCT

Basic information

species Zea mays
transcript GRMZM5G877077_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149084444|gb|EE173902.2|EE173902
EST:     GAGAGCGGGGCAGGACGATGGCGTCGGAGGATCTCGGCGTCGCCACTAAG                         GATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTA
genomic: GAGAGCGGGGCAGGACGATGGCGTCGGAGGATCTCGGCGTCGCCACTAAGgtcaggcgaa ... tcaattgcagGATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTA
EST: gi|149107402|gb|EE189281.2|EE189281
EST:     GAGAGCGGGGCAGGACGATGGCGTCGGAGGATCTCGGCGTCGCCACTAAG                         GATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTA
genomic: GAGAGCGGGGCAGGACGATGGCGTCGGAGGATCTCGGCGTCGCCACTAAGgtcaggcgaa ... tcaattgcagGATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtgacctttcatgaaatgtcagtgacctcaacttttttttttcaattgcagGATACAGAAGTTGTAAACACAAAACCAGCAAAGCGATACCCACTTGCGTTATGGATAGCCATATTGGGCCTGATAATGCTAGTTGGTGTGTACATATTCT
                             cctcaacttttttttt  CT-rich tract
                                 aacttttttttttcaa  TA-rich tract