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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccagccccaaacgcacgcacgcacgagcactcatcacgctctgttgtcgtcttagcttgtccctctctctctctctctctctctctctatctctctctctctccgatgtcctatcccgctactctagctccgaccggcctgtgccatgcatggttctgacgctgtgtgtgcgcacatcgtatcatggctatagGTTCTCTGGCCGCGGCTGGTGGCCAACAAGCTCTTCCGGAAGACCTCGGGCAGCCACGCTTTCGTCGCCGACTTCCCGGCCGCCGATGACGATGACGACA

Basic information

species Zea mays
transcript GRMZM5G876768_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152390_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g13520.1 (Oryza sativa), 3'ss of exon 1
gtaggccagccccaaacgcacgcacgcacgagcactcatcacgctctgttgtcgtcttagcttgtccctctctctctctctctctctctctctatctctctctctctccgatgt-cctatcccgctactctagctccgaccggcctgtgccatgcatggtt-ctgacgctgtgtgtgcgcacatcgtat---catggctatagGTTCTCTGGCCGCGGCTGGTGGCCAACAAGCTCTTCCGGAAGACCTCGGGCAGCCACGCTTTCGTCGCCGACTTCCCGGCCGCCGATGACGATGACGACA
                                                                                                              |||| |||| |  |||   ||||||      || | |||  |    ||||  || ||| |   |    |      || |     ||    |||||||| |||||| |||||||||| |||||||||||| ||||| | || |||||||| || ||||||||||||||||||   |||| ||| || |||  | 
------------------------------------------------------------------------------------------------------------gtatgtacctagctagcttagctagcttgacgaggtcggtgtgagatttggtagctcacgtttgatagctgattcgtgtgtttgtgtgtggctagGTTCTTTGGCCGAGGCTGGTGGCGAACAAGCTCTTCAGGAAGCCATCCGGCAGCCATGCCTTCGTCGCCGACTTCCCGATGGCCGTTGATGACGACTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgccatgcatggttctgacgctgtgtgtgcgcacatcgtatcatggctatagGTTCTCTGGCCGCGGCTGGTGGCCAACAAGCTCTTCCGGAAGACCTCGGGCAGCCACGCTTTCGTCGCCGACTTCCCGGCCGCCGATGACGATGACGACA
               ttctgac  putative branch site (score: 2)