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...tctcctgcgtgttcaagaaaataaaacatgttgaaactgaaataactataaaccctcatgaactattgttcttacactcgtttgtttatttgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATGATATAAATAGGGTTTCAACCGTTCTTTCAATTTCCAAACCAGAAGCAT
species | Zea mays |
transcript | GRMZM5G876621_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGACCACGACTCCGACGACTCCGCGGANCTCATCTCCCACAGACAGCAG CAAAATTATAGTEST: gi|149084442|gb|EE173900.2|EE173900
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGT
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATEST: gi|89252989|gb|DY624775.1|DY624775
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATEST: gi|211061876|gb|FL005131.1|FL005131
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
EST: CGGAACACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGGAGTGA-GTTGATATACAGCGGCGC-AAGAAGA
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTG-AGTGAAGTTGATATACAGCGGCGCCAAGAGGA
ctataaaccctcatgaactattgttcttacactcgtttgtttatttgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATGATATAAATAGGGTTTCAACCGTTCTTTCAATTTCCAAACCAGAAGCAT
ttcttac putative branch site (score: 14)
tttattt putative PPT
tttgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcctgcgtgttcaagaaaataaaacatgttgaaactgaaataactataaaccctcatgaactattgttcttacactcgtttgtttatttgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATGATATAAATAGGGTTTCAACCGTTCTTTCAATTTCCAAACCAGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-ctcctgc
- - - - - - - - - aaataaa
- - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - -aaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaac