1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaccgatccctcgcgtgttaattttgttcttttatttttccgtgcgatttcagagagattcctgctgtttatattatgatcgtttggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG
species | Zea mays |
transcript | GRMZM5G871572_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTEST: gi|93012428|gb|EB637948.1|EB637948
genomic: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
EST: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTEST: gi|28930925|gb|CB334286.1|CB334286
genomic: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
EST: ATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTEST: gi|94474067|gb|EB703025.1|EB703025
genomic: ATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
EST: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTEST: gi|149055712|gb|EE156420.2|EE156420
genomic: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
EST: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTEST: gi|71432571|gb|DR813621.1|DR813621
genomic: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
EST: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAG GGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
genomic: TGTTGCCTCAGCGCTGCGGCGCTGTATCTCCTCGGGAGGAGCAGCGGAAGgtaccgatcc ... tggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTT
ccgtgcgatttcagagagattcctgctgtttatattatgatcgtttggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG
tgtttatattatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgatccctcgcgtgttaattttgttcttttatttttccgtgcgatttcagagagattcctgctgtttatattatgatcgtttggtgctcagGGATGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC