1 5' 3' | 2 5' 3' |
...aaaaatatcaattttctgaatataaattttatgctgtcattgcttttctattaagatatggtactgtgtccctacctcgttcatgccctatgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGATCACTTTGTTTGCTCAGACTGTTTCAAAGAAAATGGTTCAAAGAGACTT
species | Zea mays |
transcript | GRMZM5G871463_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTG GTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGAEST: gi|37376233|gb|CF624624.1|CF624624
genomic: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgt ... tgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
EST: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTG GTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGAEST: gi|211377790|gb|FL432886.1|FL432886
genomic: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgt ... tgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
EST: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTG GTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGAEST: gi|60353696|gb|DN220669.1|DN220669
genomic: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgt ... tgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
EST: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTG GTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGAEST: gi|5152847|gb|AI759012.1|AI759012
genomic: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgt ... tgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
EST: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTG GTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
genomic: CCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgt ... tgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGA
ttctattaagatatggtactgtgtccctacctcgttcatgccctatgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGATCACTTTGTTTGCTCAGACTGTTTCAAAGAAAATGGTTCAAAGAGACTT
ttaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaatatcaattttctgaatataaattttatgctgtcattgcttttctattaagatatggtactgtgtccctacctcgttcatgccctatgatatgcagGTTCCATCCATCTTGTGTGGCTATGACCATTGAACAGGCCAAAAAGCTAGATCACTTTGTTTGCTCAGACTGTTTCAAAGAAAATGGTTCAAAGAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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aaaaata
- - - - - -ttttctg
- - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcccta