1 5' 3' | 2 5' 3' | 3 5' 3' |
gttcgtctctctctctctctctctcgtctatgggggtttgccagtttggggaatggggagtaggcgcaggcgccgcgtatgctgaattggtgatacatagctggtgatggtggtagtgggtttgtgaaattactaatgcttcttgcagCCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGACCTCAGGAGATGTGCTCCAGTGGCTCTCGGGGAATGCAACGAAGAGTCT
species | Zea mays |
transcript | GRMZM5G871154_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCACGGACATGCCGCACCTGAGCCGCATCCCCGGGGTCCTATCCACGG CCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGAEST: gi|89249478|gb|DY621264.1|DY621264
genomic: CCCCACGGACATGCCGCACCTGAGCCGCATCCCCGGGGTCCTATCCACGGgttcgtctct ... cttcttgcagCCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGA
EST: CCCCACGGACATGCCGCACCTGAGCCGCATCCCCGGGGTCCTATCCACGG CCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGA
genomic: CCCCACGGACATGCCGCACCTGAGCCGCATCCCCGGGGTCCTATCCACGGgttcgtctct ... cttcttgcagCCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGA
tacatagctggtgatggtggtagtgggtttgtgaaattactaatgcttcttgcagCCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGACCTCAGGAGATGTGCTCCAGTGGCTCTCGGGGAATGCAACGAAGAGTCT
tactaat putative branch site (score: 2)
tgcttctt CT-rich tract
aaattactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctctctctctctctctctcgtctatgggggtttgccagtttggggaatggggagtaggcgcaggcgccgcgtatgctgaattggtgatacatagctggtgatggtggtagtgggtttgtgaaattactaatgcttcttgcagCCGTCACTACGTATATCCATCCATTGGGCTGCTGATTTCTGTGGGTCCTGACCTCAGGAGATGTGCTCCAGTGGCTCTCGGGGAATGCAACGAAGAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA