Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211138814|gb|FL422225.1|FL422225EST: GGCGCCTACCGAAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCCGC GTACACATCAT
genomic: GGCGCCTACCGAA-GCGCTGACGCTCCTCAACGGCAAGTGGATCCTC-GCgtaagaaacc ... gtgatttcagGTACACATCAT
EST:
gi|211290009|gb|FL375492.1|FL375492EST: CGGCGCCTACCNGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATT
genomic: CGGCGCCTACC-GAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATT
EST:
gi|211048945|gb|FL421711.1|FL421711EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTT
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTT
EST:
gi|211321193|gb|FL380421.1|FL380421EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGGGAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
EST:
gi|88755855|gb|DY539996.1|DY539996EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
EST:
gi|211113241|gb|FL096526.1|FL096526EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
EST:
gi|149073572|gb|EE161875.2|EE161875EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCC
EST:
gi|211026990|gb|FL377492.1|FL377492EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTC
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTC
EST:
gi|93014092|gb|EB639612.1|EB639612EST: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAA
genomic: CCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAA
EST:
gi|211334023|gb|FL370158.1|FL370158EST: CGGCGCCTACCGAAGCGCTGACGCTCCCTCAACGGCAAGTGGATCCTCGC GTACACATCATTTTCCCAACTGTTC
genomic: CGGCGCCTACCGAAGCGCTGACGCTCC-TCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
34 (upstream exon),
45 (downstream exon)
Score:
14GGGCCAAGGTGTTGGAGCTCATCACGCAGCTCGAGACGCGCAACCCCACGCCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCCAGCGCTGGTGAAGGTGGAGGAAATATCACAGACCATTGATTCCAAGAAC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
75GGGCCAAGGTGTTGGAGCTCATCACGCAGCTCGAGACGCGCAACCCCACGCCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCCAGCGCTGGTGAAGGTGGAGGAAATATCACAGACCATTGATTCCAAGAAC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
66GGGCCAAGGTGTTGGAGCTCATCACGCAGCTCGAGACGCGCAACCCCACGCCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCCAGCGCTGGTGAAGGTGGAGGAAATATCACAGACCATTGATTCCAAGAAC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
303GGGCCAAGGTGTTGGAGCTCATCACGCAGCTCGAGACGCGCAACCCCACGCCGGCGCCTACCGAAGCGCTGACGCTCCTCAACGGCAAGTGGATCCTCGCgtaagaaacc ... gtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCCAGCGCTGGTGAAGGTGGAGGAAATATCACAGACCATTGATTCCAAGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctgcagccagcagccttaagaattttaggagtcttatcgattatgtgatttcagGTACACATCATTTTCCCAACTGTTCCCACTGTTGGAGTTTGGAAAGCTGCCAGCGCTGGTGAAGGTGGAGGAAATATCACAGACCATTGATTCCAAGAAC
ttaagaatttta TA-rich tract