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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcccgcccatccatgaccacggggcatctgctggtcttcatcgccaccccagcaaaactaagggttcaaatttaaatagcccttatattttcccttcttcccgtctccagGCTCGCATTCAGATGGGACGAGCTCGGTCAGGAGATCATGAGGATCGCGGTGCCCGGCGCGCTCGCGCTCATGGCTGACCCAGTCGCCTCCCTCGTCGAC

Basic information

species Zea mays
transcript GRMZM5G870170_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870170_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 3'ss of exon 1
gtgagcccgcccatccatgaccacggggcatctgctggtcttcatcgccaccccagcaaaactaagggttcaaatttaaatagcccttatattttcccttcttcccgtctccagGCTCGCATTCAGATGGGACGAGCTCGGTCAGGAGATCATGAGGATCGCGGTGCCCGGCGCGCTCGCGCTCATGGCTGACCCAGTCGCCTCCCTCGTCGAC
| | ||| | | |||| | || || ||| | ||| || | | | | | || ||||||| || | |||| | || ||||| |||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||
------------gttgttaacc--gagtcatcggtctatcg--atttttttccctttccatcta----tttatctctgagt-----ttttattttcttgggggtcctgttgcagGTTGGCGTTCAGGTGGGACGAGCTCGGGAGGGAGATCATGGGGATTGCGGTGCCCGGCGCGCTCGCCCTCATGGCTGACCCGGTCGCCTCGCTCGTCGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaagggttcaaatttaaatagcccttatattttcccttcttcccgtctccagGCTCGCATTCAGATGGGACGAGCTCGGTCAGGAGATCATGAGGATCGCGGTGCCCGGCGCGCTCGCGCTCATGGCTGACCCAGTCGCCTCCCTCGTCGAC
                        cccttatattttccct  CT-rich tract
 ttcaaatttaaata  TA-rich tract