1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgatggactaatactatttgactttgtagcccacatttttgtttactccagtctttattttttggttctcactcttgaattgtcttttgcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTTGTCCAAATCAAG
species | Zea mays |
transcript | GRMZM5G869482_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAG CCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTTEST: gi|89763719|gb|DY690800.1|DY690800
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAGgtcagtcacg ... gcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTT
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACAAACTTCTTGCAGCAG CCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAEST: gi|149042031|gb|EE047006.2|EE047006
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAGgtcagtcacg ... gcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGA
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAG CCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTTEST: gi|148934789|gb|EC878837.2|EC878837
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAGgtcagtcacg ... gcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTT
EST: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAG CCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTT
genomic: TCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACGAACTTCGTGCAGCAGgtcagtcacg ... gcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTT
tactccagtctttattttttggttctcactcttgaattgtcttttgcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTTGTCCAAATCAAG
ttctcac putative branch site (score: 94)
tcttttgc putative PPT
agtctttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgatggactaatactatttgactttgtagcccacatttttgtttactccagtctttattttttggttctcactcttgaattgtcttttgcatgtgaagCCTGGTTGCTCAAGTGAATTTTCTGGAATTGAATTTGGAGAAGCACAACTTGTCCAAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
tgtgatg
- - - - - - - - - - - - - - - gcccaca
- - - - - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattg