1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccaattgtttttattctcttgcaggcagtaagttttctcctttgttgagaggcatttttgtttaggaaattatcaacttctttaagatatatgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCCATGATTTCAGCTTATTTTTGCAGATACCTGG
species | Zea mays |
transcript | GRMZM5G868908_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|76020023|gb|DT947193.1|DT947193
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|148956886|gb|EC902807.2|EC902807
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|89754532|gb|DY685280.1|DY685280
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|211095546|gb|FL307582.1|FL307582
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|50332845|gb|CO527971.1|CO527971
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|32910587|gb|CF015399.1|CF015399
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCGACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|76292110|gb|DV031678.1|DV031678
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|148930846|gb|EC873247.2|EC873247
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|211299419|gb|FL314583.1|FL314583
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|211166826|gb|FL324154.1|FL324154
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: TCACCGACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGCA CCTATGTCTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCEST: gi|9824964|gb|BE575061.1|BE575061
genomic: TCACCAACGATGACAACCGCGAGGGCTCCTGCCAATACCACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
EST: CACCCCTCCGCA CCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
genomic: CACCCCTCCGTAagctcctccg ... atgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGC
tgagaggcatttttgtttaggaaattatcaacttctttaagatatatgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCCATGATTTCAGCTTATTTTTGCAGATACCTGG
tgttttc CT-rich tract
tttaagatatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattgtttttattctcttgcaggcagtaagttttctcctttgttgagaggcatttttgtttaggaaattatcaacttctttaagatatatgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCCATGATTTCAGCTTATTTTTGCAGATACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -tgttttt
- - - - - - - - - -tgcaggc
- - - - - - - - - - - - - - - - - - - - tttgttg