Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcttgccaaatttataattttccatgtcatctcacctgctgcgatttttgcaatcttttgtcttttatgattctaatgccacctatttttcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAGACCAAGATTAATCTGCTCAAACTTGCCCATTTTGCGGTGATAACTTCTC

Basic information

species Zea mays
transcript GRMZM5G868757_T07
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868757_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g32800.1 (Oryza sativa), 3'ss of exon 1
agcttgccaaat-ttataattttccatgtcatc-----tcacctgctgcgatttttgcaatcttttgtcttttatgattctaatgccacctatttttcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAGACCAAGATTAATCTGCTCAAACTTGCCCATTTTGCGGTGATAACTTCTC
   | ||  ||| ||  ||| ||  ||  | ||      ||  ||||  |  ||||      |      |  |   ||||||| | ||   ||| | |    |||||| || ||||| ||||| ||||||||||||||||||||    ||||| ||||| ||||| ||||| |||||||||||||| || ||||| ||  |||| |
---tagctgaatgtttcaatcttggattacttcaacaaccatatgcttagggttttaactgatgggcaatcctgcaattctaacggcattcattctcc---cacagACTGGCGACACCATCATACAGCTCTACAACAATTTCATCTCTGACTTCGAGACGAAGATCAATCTTCTCAAACTTGCCCACTTCGCGGTCATCGCTTCAC

upper sequence: GRMZM5G868757_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g11570.1 (Oryza sativa), 3'ss of exon 1
-agcttgccaaatttat---aattttccatgtcatctcacctgctgcgatttttgcaatcttttgtcttttatgattctaatgccacctatttttcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAGACCAAGATTAATCTGCTCAAACTTGCCCATTTTGCGGTGATAACTTCTC
 |  || |     || |   ||  || | |    |   | |||||| |    |||     | |    ||||   |||||||   |  |     |||  |||||||| || |||||  |||| ||||||||||||||||||||    || || ||||| ||||| ||||| ||||||||||| ||||| ||||| ||  |||| |
aaatttactcttgttgtttgaaccttgcttaggtttgtaactgctgtg----ttgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211319212|gb|FL155860.1|FL155860
EST:     ACCAGCTCACCCTCAASCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|149078129|gb|EE166878.2|EE166878
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211132128|gb|FL064538.1|FL064538
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCAACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211132126|gb|FL064536.1|FL064536
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|148986083|gb|EE029890.2|EE029890
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|148965470|gb|EE016279.2|EE016279
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211132131|gb|FL064541.1|FL064541
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATTCATTCAGCTCT
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTAT-CATTCAGCTCT
EST: gi|211277769|gb|FL330867.1|FL330867
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211099199|gb|FL356879.1|FL356879
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|21891735|gb|BQ744948.1|BQ744948
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|148930110|gb|EC872431.2|EC872431
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|148948407|gb|EC893924.2|EC893924
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211319213|gb|FL155861.1|FL155861
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|148982851|gb|EE028701.2|EE028701
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211131207|gb|FL064532.1|FL064532
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTG
EST: gi|14529417|gb|BI096550.1|BI096550
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCACACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211319209|gb|FL155857.1|FL155857
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|26557995|gb|CA830230.1|CA830230
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211540331|gb|FL320589.1|FL320589
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|101383033|gb|EB813569.1|EB813569
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211132130|gb|FL064540.1|FL064540
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGNAGACACTATCATTCAGCTCTACAACAATTTCATTGTCAACTTTGA
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGG-AGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGA
EST: gi|211132124|gb|FL064534.1|FL064534
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGTAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGA
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGG-AGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGA
EST: gi|22521302|gb|BU080113.1|BU080113
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|211319208|gb|FL155856.1|FL155856
EST:     ACCAGCTCACCCTCAAGCT-GACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|149069680|gb|EE158063.2|EE158063
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|9731352|gb|BE510104.1|BE510104
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|5268656|gb|AI770620.1|AI770620
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|149081820|gb|EE170979.2|EE170979
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
EST: gi|16927387|gb|BM080456.1|BM080456
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCTTACAGCTCCAGGTCGCACAGgttcgcttcc ... tcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcaatcttttgtcttttatgattctaatgccacctatttttcatctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATTGTCGACTTTGAGACCAAGATTAATCTGCTCAAACTTGCCCATTTTGCGGTGATAACTTCTC
                          ttctaat  putative branch site (score: 2)
                                     cctatttttcatct  putative PPT
                  ttttatgattctaat  TA-rich tract