1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacctttgtggaatctttttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
species | Zea mays |
transcript | GRMZM5G868757_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|4804325|gb|AI666191.1|AI666191
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: CTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|6020410|gb|AW065338.1|AW065338
genomic: CTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AGCTGCTTGAGAAAATCAATATTCTTTGTCTGGA-GGAGATAATCTTTAG TCGGCCATCTGAAAATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|60336794|gb|DN203767.1|DN203767
genomic: AGCTGCTTGAGAAAATCAATATTCTTTGTCTG-ATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|211013700|gb|FL252294.1|FL252294
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
ttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
ttctgac putative branch site (score: 2)
cttgccttcattttc putative PPT
attttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctttgtggaatctttttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA