1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtgaaaaatatctgtggctttatctgaataccagagagtgaattgatgccatttcattaatatatatttgtttcctatcatattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTCTTTTTCCTGGATCAAG
species | Zea mays |
transcript | GRMZM5G864414_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTTCTTCTTCAAGCTACTGTTTATAATGCTGCAGTTG ACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTCEST: gi|60395565|gb|DN228435.1|DN228435
genomic: TGAAGTTCTTCTTCAAGCTACTGTTTATAATGCTGCAGTTGgtaagtgaaa ... atattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTC
EST: TCTTCTTC-AGCTACTGTTTATAATGCTGCAGTTG ACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTCEST: gi|18963937|gb|BM660714.1|BM660714
genomic: TCTTCTTCAAGCTACTGTTTATAATGCTGCAGTTGgtaagtgaaa ... atattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTC
EST: TCGTGCCCCTGAAGTTCTTCTTCNAGCTACTGTTTATAATGCTGCAGTTG ACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTC
genomic: TCGTGCCCCTGAAGTTCTTCTTCAAGCTACTGTTTATAATGCTGCAGTTGgtaagtgaaa ... atattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTC
agagtgaattgatgccatttcattaatatatatttgtttcctatcatattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTCTTTTTCCTGGATCAAG
cattaat putative branch site (score: 422)
tattttc putative PPT
atttcattaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaaaatatctgtggctttatctgaataccagagagtgaattgatgccatttcattaatatatatttgtttcctatcatattttcagACATGTGGGCAATGGGTGCCATTATCGCGGAGCTATTTTCACTGCGACCTCTTTTTCCTGGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT