1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cccaagctttgattatcaagccaagataatgcatcaggttacagtagctaactttccttcgcgagaagttcacttacaattccacctgcttaatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGGACACTCTAAGAAAGGCAGCCCATGCATGGAAGCGTATTGTGGAACTAC
species | Zea mays |
transcript | GRMZM5G864319_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|78092061|gb|DV520435.1|DV520435
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|18963249|gb|BM660327.1|BM660327
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCG-CGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|101399209|gb|EB821478.1|EB821478
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|78118216|gb|DV536603.1|DV536603
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|31558694|gb|CD527906.1|CD527906
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|211352407|gb|FL351964.1|FL351964
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGEST: gi|71438097|gb|DR819147.1|DR819147
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|31557927|gb|CD527139.1|CD527139
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTTCTACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|149044450|gb|EE047571.2|EE047571
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|18655284|gb|BM500089.1|BM500089
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCG-CGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACCTGGTTAAGEST: gi|148952746|gb|EC898728.2|EC898728
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAA-
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|149089538|gb|EE178785.2|EE178785
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|149096635|gb|EE182400.2|EE182400
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|211287634|gb|FL366210.1|FL366210
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|148942481|gb|EC887498.2|EC887498
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|71315288|gb|DR794256.1|DR794256
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|148974786|gb|EE025606.2|EE025606
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGEST: gi|149106570|gb|EE188463.2|EE188463
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
EST: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCT GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
genomic: ACGCCGTCGAAGTCGGCGACCGCATGGCCCGACTCGTCGCGTCCGACCCTgtaagtgatt ... taatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAG
agctaactttccttcgcgagaagttcacttacaattccacctgcttaatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGGACACTCTAAGAAAGGCAGCCCATGCATGGAAGCGTATTGTGGAACTAC
cctgctt CT-rich tract
ttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaagctttgattatcaagccaagataatgcatcaggttacagtagctaactttccttcgcgagaagttcacttacaattccacctgcttaatacgtagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGACTTGTTTAAGGACACTCTAAGAAAGGCAGCCCATGCATGGAAGCGTATTGTGGAACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-ccaagct
- - - - - - - - caagcca
- - - - - - - - - - - - - - - gcatcag
- - - - - - - - - - - - - - - - - - - - -cagtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctgc