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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtcagttgacgttagatcaaagatggtgggctaagatttaatatgtgcacatgtgcaccaagatggcatgtgcaccagatatgctccctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTATCCGGCCGTCACCCCTCCCCCTGCCCCTCCCGAGTTGGATTGTTCGCGGA

Basic information

species Zea mays
transcript GRMZM5G862959_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211337491|gb|FL098065.1|FL098065
EST:     GCACCTGCACGCGTCCACCAAG                         CCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
genomic: GCACCTGCACGCGTCCACCAAGgggagcatat ... ctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
EST: gi|211337495|gb|FL098069.1|FL098069
EST:     GTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAG                         CCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
genomic: GTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAGgggagcatat ... ctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
EST: gi|211337493|gb|FL098067.1|FL098067
EST:     TCTCTTCCTGCTGTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAG                         CCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
genomic: TCTCTTCCTGCTGTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAGgggagcatat ... ctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
EST: gi|211043059|gb|FL422974.1|FL422974
EST:     GCACGCGTCCACCAAG                         C
genomic: GCACGCGTCCACCAAGgggagcatat ... ctccaccaag-
EST: gi|211043059|gb|FL422974.1|FL422974
EST:     GCACGCGTCCACCAAG                         C
genomic: GCACGCGTCCACCAAGgggagcatat ... ctccaccaag-
EST: gi|211337489|gb|FL098063.1|FL098063
EST:     TCTCTTCCTGCTGTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAG                         CCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
genomic: TCTCTTCCTGCTGTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAGgggagcatat ... ctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
EST: gi|211337490|gb|FL098064.1|FL098064
EST:     GTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAG                         CCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT
genomic: GTCGCAGTCGCAGGACGCACCTGCACGCGTCCACCAAGgggagcatat ... ctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgcacatgtgcaccaagatggcatgtgcaccagatatgctccctccaccaagCCCCCGACTCCCCGAGGCCCCGACCTGCGCACCCACGGGATCCCTACCTATCCGGCCGTCACCCCTCCCCCTGCCCCTCCCGAGTTGGATTGTTCGCGGA
                                         ctccctccacc  CT-rich tract