Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaccactggatccatgtgtctcacgctataccctcgccctagatccttgcgggttgctgacccccttcagttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG

Basic information

species Zea mays
transcript GRMZM5G862331_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862331_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 3'ss of exon 1
------gtaccaccactggatccatgtgtct-cacgctat-accctcgccctagatcc--ttgcgggttgctgacccccttcagttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
       |||| |||   |||||  |  |||     |||| | |||  |||||  ||   | || |  | || ||||| ||  | |   |||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||
gtctccctacctccat--gatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgttgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211420266|gb|FL241379.1|FL241379
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302420|gb|FL241361.1|FL241361
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|28361540|gb|CB239896.1|CB239896
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302419|gb|FL241360.1|FL241360
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302415|gb|FL241356.1|FL241356
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211131812|gb|FL249254.1|FL249254
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGCGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302417|gb|FL241358.1|FL241358
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302421|gb|FL241362.1|FL241362
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|12047207|gb|BF729346.1|BF729346
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|71419429|gb|DR804766.1|DR804766
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|9461255|gb|BE453642.1|BE453642
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCA
EST: gi|211420260|gb|FL241373.1|FL241373
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|113701557|gb|EE679061.1|EE679061
EST:     TGGACGGCGTTGACGTTGATATGGTTGCTTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGTTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420264|gb|FL241377.1|FL241377
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGTGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211130892|gb|FL249249.1|FL249249
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422859|gb|FL241387.1|FL241387
EST:     GGACGGCGGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: GGACGGC-GCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302413|gb|FL241354.1|FL241354
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422855|gb|FL241383.1|FL241383
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|91051981|gb|EB162399.1|EB162399
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302411|gb|FL241352.1|FL241352
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211131815|gb|FL249257.1|FL249257
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|28361745|gb|CB240101.1|CB240101
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|71436658|gb|DR817708.1|DR817708
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|28361810|gb|CB240166.1|CB240166
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420263|gb|FL241376.1|FL241376
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|28987157|gb|CB351492.1|CB351492
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302422|gb|FL241363.1|FL241363
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCG-AM                         STGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|78180902|gb|DV551275.1|DV551275
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|9566340|gb|BE475849.1|BE475849
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420253|gb|FL241366.1|FL241366
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCG-AM                         BTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302412|gb|FL241353.1|FL241353
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|28361626|gb|CB239982.1|CB239982
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|161594401|gb|EY963782.1|EY963782
EST:     CGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: CGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302418|gb|FL241359.1|FL241359
EST:     TGGACGGCGCTGACGTTGATATGGCTGCSTCCGGGGATGACGCGGCG-AM                         STGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211300286|gb|FL241350.1|FL241350
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302414|gb|FL241355.1|FL241355
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-                         CTKCAGGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCA-GGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
EST: gi|211420256|gb|FL241369.1|FL241369
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCG-AM                         STGCAGGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCA-GGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
EST: gi|211302424|gb|FL241365.1|FL241365
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302410|gb|FL241351.1|FL241351
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211302416|gb|FL241357.1|FL241357
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCACGAGCTCGACGAGATGAAGCGCACGCTGAACGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|60355238|gb|DN222211.1|DN222211
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422858|gb|FL241386.1|FL241386
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422860|gb|FL241388.1|FL241388
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420254|gb|FL241367.1|FL241367
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-                         STGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|101392226|gb|EB818041.1|EB818041
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420261|gb|FL241374.1|FL241374
EST:     GGACGGCGCTGACGTTGATATGGCTGCCTYCGGGGATGACGCGGCGAACG                         -TGCAGGAGCTCGACGAGATAAAGCGCAGGCTGAAGGAGATGGAGGAGGA
genomic: GGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-Ggtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
EST: gi|8577025|gb|BE129662.1|BE129662
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|93015249|gb|EB640769.1|EB640769
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|30087763|gb|CB885969.1|CB885969
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420265|gb|FL241378.1|FL241378
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422856|gb|FL241384.1|FL241384
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGTGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|30088074|gb|CB886279.1|CB886279
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420262|gb|FL241375.1|FL241375
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCG-AM                         STGCAGGAGCTCGACAGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGAC-GAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGA
EST: gi|211420267|gb|FL241380.1|FL241380
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAA-                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211420255|gb|FL241368.1|FL241368
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|89759138|gb|DY688052.1|DY688052
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211541161|gb|FL236758.1|FL236758
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|74234517|gb|DT642431.1|DT642431
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422853|gb|FL241381.1|FL241381
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211422861|gb|FL241389.1|FL241389
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|74244706|gb|DT652620.1|DT652620
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|60351779|gb|DN218752.1|DN218752
EST:     ATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: ATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|71427533|gb|DR808583.1|DR808583
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 214

CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 95

CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 134

CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 126

CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataccctcgccctagatccttgcgggttgctgacccccttcagttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
                             tgctgac  putative branch site (score: 126)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccaccactggatccatgtgtctcacgctataccctcgccctagatccttgcgggttgctgacccccttcagttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAAGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG