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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcatgtcaatgtaatttctaagtttctggtgtccctatgttcgacaatgttttcttgttgtgatactgagtttctcttttcccttatttttcttttcagGCCACTCATATCACTTGCTTATCCTCT

Basic information

species Zea mays
transcript GRMZM5G862101_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223200|gb|FL136732.1|FL136732
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223194|gb|FL136726.1|FL136726
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223203|gb|FL136735.1|FL136735
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGNCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223202|gb|FL136734.1|FL136734
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223197|gb|FL136729.1|FL136729
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211221143|gb|FL136724.1|FL136724
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223201|gb|FL136733.1|FL136733
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223204|gb|FL136736.1|FL136736
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211223195|gb|FL136727.1|FL136727
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAAGAACTTCGATGTCCTTGCCGGgtatgattgt ... ttcttttcagGCCACTCATATCACTTGCTTATCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgttttcttgttgtgatactgagtttctcttttcccttatttttcttttcagGCCACTCATATCACTTGCTTATCCTCT
                   tactgagtttctcttt  CT-rich tract
                                       ttatttttcttttca  TA-rich tract