1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatatctctttcattttcctgtccattcattgatttgatcgaacgttacgtacatattccagcataggattaaccgaatcggatccaagatcgactcccccaagttgtgattttttttcgtctctctcgatacatattcctgcagGGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGA
species | Zea mays |
transcript | GRMZM5G860590_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCGGCTCTTCG GGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCEST: gi|71441990|gb|DR823040.1|DR823040
genomic: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCGGCTCTTCGgtaatatctc ... attcctgcagGGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGC
EST: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCGGCTCTTCG GGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGC
genomic: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCGGCTCTTCGgtaatatctc ... attcctgcagGGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGC
tcgactcccccaagttgtgattttttttcgtctctctcgatacatattcctgcagGGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGA
tattcct CT-rich tract
ttgtgatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatctctttcattttcctgtccattcattgatttgatcgaacgttacgtacatattccagcataggattaaccgaatcggatccaagatcgactcccccaagttgtgattttttttcgtctctctcgatacatattcctgcagGGCTGCCGTCCAGGTACAGGGATTCTGTGAGGGCCATCAGGCCCGGCCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC