1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagcgaacacactccgacactcgccacccccctctcgcccccttcgcccgcagctgccgtcgcatgaaattgacgaactctgcttcctcttctcgatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCATCTCCGGCTTCCTTATTAGGATCAGCCCGTCGATCGATCATGGCGTCG
species | Zea mays |
transcript | GRMZM5G860137_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211434558|gb|FL418498.1|FL418498
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|71298333|gb|DR785148.1|DR785148
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCCCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCACCTTCEST: gi|89756408|gb|DY686458.1|DY686458
genomic: CGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|50337630|gb|CO532756.1|CO532756
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149110543|gb|EE190473.2|EE190473
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|89760643|gb|DY688974.1|DY688974
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149071725|gb|EE160115.2|EE160115
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211456419|gb|FL396787.1|FL396787
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149000558|gb|EE037748.2|EE037748
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211023121|gb|FL428611.1|FL428611
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211376449|gb|FL382306.1|FL382306
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTKAGCCAGTGATGCATCTTCEST: gi|211245222|gb|FL396978.1|FL396978
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGAKGCATCTTCEST: gi|211024306|gb|FL368563.1|FL368563
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149029957|gb|EE286286.2|EE286286
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|37419864|gb|CF647618.1|CF647618
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: TCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211136636|gb|FL389507.1|FL389507
genomic: TCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149087112|gb|EE176651.2|EE176651
genomic: CCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|74232957|gb|DT640871.1|DT640871
genomic: GTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|71426143|gb|DR807193.1|DR807193
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211158239|gb|FL401295.1|FL401295
genomic: CGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211199171|gb|FL385134.1|FL385134
genomic: GCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|78087866|gb|DV516259.1|DV516259
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|78078473|gb|DV506886.1|DV506886
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|89248149|gb|DY619935.1|DY619935
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|148947617|gb|EC893097.2|EC893097
genomic: CAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|149084568|gb|EE174037.2|EE174037
genomic: CGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211111975|gb|FL386052.1|FL386052
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: ACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|78085615|gb|DV514008.1|DV514008
genomic: ACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|71442414|gb|DR823464.1|DR823464
genomic: CAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|93016086|gb|EB641606.1|EB641606
genomic: CGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211164630|gb|FL401351.1|FL401351
genomic: CGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|89248499|gb|DY620285.1|DY620285
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|71439486|gb|DR820536.1|DR820536
genomic: GGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCEST: gi|211403233|gb|FL400076.1|FL400076
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
EST: GTACTCGGAGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTG CTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
genomic: GTACTCGGCGCTCCTCCCCCGTCGCCGCCGGAAATCAGGAAGCCCAAGTGgtagcgaaca ... gatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTC
gcagctgccgtcgcatgaaattgacgaactctgcttcctcttctcgatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCATCTCCGGCTTCCTTATTAGGATCAGCCCGTCGATCGATCATGGCGTCG
aattgac putative branch site (score: 74)
ctctgcttcctcttct putative PPT
atgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcgaacacactccgacactcgccacccccctctcgcccccttcgcccgcagctgccgtcgcatgaaattgacgaactctgcttcctcttctcgatctcgcagCTCTCTTGGGTGCGCTCGTCGCCGGTGGCAGTGAGCCAGTGATGCATCTTCATCTCCGGCTTCCTTATTAGGATCAGCCCGTCGATCGATCATGGCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGTCGCCG