1 5' 3' | 2 5' 3' |
gtaagctctcgctcgcactgaatccgtaacctctcgtgtagagttcgcgtcggagtctgacctgttttattggtggatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGCGGGTGTGGCGGCGGCGGTGGCGATATACAAGGTCGGGTCCAGTCTCCT
species | Zea mays |
transcript | GRMZM5G856734_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTTCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211237681|gb|FL238796.1|FL238796
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211237680|gb|FL238795.1|FL238795
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGANCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|148986679|gb|EE030460.2|EE030460
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: CGGTGTAGCGCCGGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236493|gb|FK950769.1|FK950769
genomic: CGGTGTAGCGCC-GGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|71442989|gb|DR824039.1|DR824039
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGAGCGCGCCTCCCCTGGCCGTGCTCGEST: gi|211236488|gb|FK950764.1|FK950764
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211235447|gb|FL238785.1|FL238785
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGANCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236494|gb|FK950770.1|FK950770
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTWGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTTCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236492|gb|FK950768.1|FK950768
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211237682|gb|FL238797.1|FL238797
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211347001|gb|FK981668.1|FK981668
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGCGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCEST: gi|148941737|gb|EC886692.2|EC886692
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCG-GAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTC
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236489|gb|FK950765.1|FK950765
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211237687|gb|FL238802.1|FL238802
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|149103627|gb|EE289029.2|EE289029
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236491|gb|FK950767.1|FK950767
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGANCTGTGGTCGGCGGCGAANGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211236487|gb|FK950763.1|FK950763
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGANCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGEST: gi|211235445|gb|FL238783.1|FL238783
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
EST: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGC TGGCGGAGCTGTGGTCGGCGGCGAAGAGCGCGCCTCCCCTGGCCGTGCTCG
genomic: GCGGTGTAGCGCCGGGGCCGGGCAGGGCGGGGTCAAGGTCCCTGCGAAGCgtaagctctc ... gatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCG
ctctcgtgtagagttcgcgtcggagtctgacctgttttattggtggatgccgcagTGGCGGAGCTGTGGTCGGCGGCGAAGGGCGCGCCTCCTCTGGCCGTGCTCGCGGGTGTGGCGGCGGCGGTGGCGATATACAAGGTCGGGTCCAGTCTCCT
gtctgac putative branch site (score: 175)
tgttttatt TA-rich tract