1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggatagtttgttacgcaacaatgcctggtgtcattggcacttgtattcctggaatacctaatgcagcaaagctcttaactttgccctgtcatctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTGCCTTGGTTCCTCAACTCGGTGAAAAGCCTCGGCTGCTATCCTTGTCAG
species | Zea mays |
transcript | GRMZM5G856084_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTEST: gi|148955679|gb|EC901358.2|EC901358
genomic: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
EST: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTEST: gi|211525859|gb|FL340350.1|FL340350
genomic: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
EST: GACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATCATATGGCGCTAGTACAGTTCAACGGTEST: gi|149051735|gb|EE155859.2|EE155859
genomic: GACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
EST: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTEST: gi|211152737|gb|FL348042.1|FL348042
genomic: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
EST: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTEST: gi|71769003|gb|DR966940.1|DR966940
genomic: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
EST: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCG CGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
genomic: CGCCTCCGCGCCATCGACACGCTCGAGAGCGTCGCTGCCTGCTGCTCGCGgtacgttcac ... catctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGT
attcctggaatacctaatgcagcaaagctcttaactttgccctgtcatctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTGCCTTGGTTCCTCAACTCGGTGAAAAGCCTCGGCTGCTATCCTTGTCAG
tcttaac putative branch site (score: 195)
ccctgtcatctttc putative PPT
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggatagtttgttacgcaacaatgcctggtgtcattggcacttgtattcctggaatacctaatgcagcaaagctcttaactttgccctgtcatctttcagCGGCTACACGCAAGTAATAAACATTATATGGCGCTAGTACAGTTCAACGGTGCCTTGGTTCCTCAACTCGGTGAAAAGCCTCGGCTGCTATCCTTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - caacaat
- - - - - - - - - - - - cctggtg
- - - - - - - - - - - - - - - - - - -gcacttg
- - - - - - - - - - - - - - - - - - - - - - - ttcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcagc