1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcttatcctccgcgctgtaacatcgataggtggtgtttgtgggaatctagcgtctgatctgtgcccttttcgttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT
species | Zea mays |
transcript | GRMZM5G851698_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCGAGCTCCTCGCCTGCNGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|211542573|gb|FL410011.1|FL410011
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGARCTCG-GCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|15312778|gb|BI478369.1|BI478369
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|211431422|gb|FL393492.1|FL393492
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCG-GCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|20300566|gb|BQ163509.1|BQ163509
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGCGCCGCAACGCCACCATGAAG -TCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGATGCTGGAAATCGATEST: gi|78079211|gb|DV507623.1|DV507623
genomic: GCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|5081006|gb|AI738268.1|AI738268
genomic: CCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|78024666|gb|DV493053.1|DV493053
genomic: CTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|29946749|gb|CB816306.1|CB816306
genomic: CTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|19058404|gb|BM737071.1|BM737071
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|21987949|gb|BQ779477.1|BQ779477
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: TGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|22819122|gb|BU499212.1|BU499212
genomic: TGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|15632345|gb|BI679438.1|BI679438
genomic: CTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|71428551|gb|DR809601.1|DR809601
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|19057795|gb|BM736462.1|BM736462
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: TCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|20300275|gb|BQ163218.1|BQ163218
genomic: TCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|31406383|gb|CD485115.1|CD485115
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG -TCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATEST: gi|31998590|gb|CD662145.1|CD662145
genomic: CCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: CAACGCCACCATGAAG -TCAACATCGCGAACCCG-CTACCGGGTGCCAGAA-AAGCTGGAAATCGATEST: gi|22935788|gb|BU572063.1|BU572063
genomic: CAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAG TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: GCTCGAGCTCCTCGCCTGCCGCGAGCTCGCGCCGCAACGCCACCATGAAGgtaagcttat ... ttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGAT
aggtggtgtttgtgggaatctagcgtctgatctgtgcccttttcgttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT
gtctgat putative branch site (score: 1017)
cccttttcgttgcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttatcctccgcgctgtaacatcgataggtggtgtttgtgggaatctagcgtctgatctgtgcccttttcgttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA